Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRA2B, Transformer 2 beta homolog (Drosophila)
Sequence ID:NM_004593
NM_001243879
RefSeqGene ID:NG_029862
Entrez Gene ID:6434
Ensembl ID:ENSG00000136527

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q26.2-q27Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 185635116 - 185655208

Transcript StartTranscript EndChromosomal Start Chromosomal End
53158185632359185635512
31593232185636152185636225
32333292185637224185637283
32933376185638891185638974
33773492185639798185639913
34933681185641583185641771
36823844185643251185643413
38453978185644388185644521
39794290185655612185655923

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821443Full LengthBC000451transformer 2 beta homolog (Drosophila)
2984771Full LengthBC000160transformer 2 beta homolog (Drosophila)
4046349Full LengthBC005898transformer 2 beta homolog (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004584  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001243879 NP_001230808    
NM_004593 NP_004584 P62995 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
U68063 AAB08701 P62995
U87836 AAB69763 P62995
U61267 AAC28242 P62995
BC000160 AAH00160 P62995
BC000451 AAH00451 P62995
BC005898 AAH05898 P62995
DQ890937 ABM81863  
EU176532 ABW03333  
AK098191 BAC05256 Q8N1H4
AB209208 BAD92445 Q59GA1
AK315632 BAG38000 B2RDQ3
AK301118 BAG62714 P62995
CR749214 CAH18071 Q68DZ9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRA2B NP_004584 M.musculus Tra2b 20462 Gene Info NP_033212 100
R.norvegicus Tra2b 117259   NP_476460 100
D.melanogaster tra2 36619   NP_995834 51
C.elegans rsp-8 176613   NP_499533 49
A.thaliana AT4G35785 829732   NP_680768 41
N.crassa NCU04164 3876870   XP_960722 37
P.falciparum PF10_0028 810186   XP_001347313 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)