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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIOBP, TRIO and F-actin binding protein
Sequence ID:NM_001039141
NM_007032
NM_138632
RefSeqGene ID:NG_012857
Entrez Gene ID:11078
Ensembl ID:ENSG00000100106

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 38161685 - 38169931

 Exon Info From UCSC:
NM_001039141
NM_007032
NM_138632

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3623592IncompleteBC004303TRIO and F-actin binding protein
3639826IncompleteBC013278TRIO and F-actin binding protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_619538  NP_008963  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039141 NP_001034230 Q9H2D6  
NM_007032 NP_008963 Q9H2D6 PH
NM_138632 NP_619538   PH

Related Sequences

 
mRNAGenPeptSwissProt
AF281030 AAG44841 Q9H2D6
BC003618 AAH03618 Q9H2D6
BC004303 AAH04303 Q9H2D6
BC013278 AAH13278 Q9H2D6
DQ228003 ABB59559 Q9H2D6
DQ228004 ABB59560 Q9H2D6
DQ228005 ABB59561 Q9H2D6
AB015343 BAA34800 Q9H2D6
AL713698 CAD28497 Q8TCM3
AM392748 CAL37626  
AM392798 CAL37676  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIOBP NP_001034230 M.musculus Triobp 110253 Gene Info NP_001034245 71
R.norvegicus Triobp 362956   XP_001065869 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)