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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCDHB2, Protocadherin beta 2
Sequence ID:NM_018936
RefSeqGene ID:NG_000017
Entrez Gene ID:56133
Ensembl ID:ENSG00000112852

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 140474414 - 140476956

NM_018936 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12726140474236140476961

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30921306Full LengthBC098575protocadherin beta 2
40007951Full LengthBC098347protocadherin beta 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061759  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018936 NP_061759 Q9Y5E7 Cadherin
Cadherin_2

Related Sequences

 
mRNAGenPeptSwissProt
AF152495 AAD43756 Q9Y5E7
BC098347 AAH98347 Q9Y5E7
BC098575 AAH98575 Q4KMG6
AF217756 AAK51623 Q9Y5E7
AB209745 BAD92982 Q59ER6
AK314642 BAG37204 B2RBF7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCDHB2 NP_061759 R.norvegicus Pcdhb2 498843   NP_001102593 77
M.musculus Pcdhb2 93873 Gene Info NP_444357 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)