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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SERPINF1, serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
Sequence ID:NM_002615
RefSeqGene ID:NG_028180
Entrez Gene ID:5176
Ensembl ID:ENSG00000132386

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
OSTEOGENESIS IMPERFECTA, TYPE VI 

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 1665353 - 1680857

NM_002615 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
114916652581665406
15024116701961670287
24244016731451673343
44159616743221674477
59780016751651675368
80194316783511678493
944115416798251680035
1155154116804801680866

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961120Full LengthBC000522serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
3531777Full LengthBC013984serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002606  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002615 NP_002606 P36955 Serpin

Related Sequences

 
mRNAGenPeptSwissProt
M76979 AAA60058 P36955
M90439 AAA93524 P36955
BC000522 AAH00522 P36955
BC013984 AAH13984 P36955
AF400442 AAK92491 P36955
BT007222 AAP35886 P36955
AY513280 AAT08033 P36955
JF432524 ADZ15741  
AB593011 BAJ83966 P36955
AB593012 BAJ83967 P36955
AB593013 BAJ83968 P36955

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SERPINF1 NP_002606 M.musculus Serpinf1 20317 Gene Info NP_035470 87
R.norvegicus Serpinf1 287526   NP_808788 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)