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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOCS4, suppressor of cytokine signaling 4
Sequence ID:NM_080867
NM_199421
Entrez Gene ID:122809
Ensembl ID:ENSG00000180008

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 55509543 - 55512303

 Exon Info From UCSC:
NM_080867
NM_199421

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30338646Full LengthBC060790suppressor of cytokine signaling 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_543143  NP_955453  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080867 NP_543143 Q5H9R6
Q8WXH5
SOCS_box
NM_199421 NP_955453 Q5H9R6
Q8WXH5
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
BC060790 AAH60790 Q5H9R6
Q8WXH5
AF424815 AAL60517 Q5H9R6
Q8WXH5
HQ448516 ADQ32995  
AK124083 BAG54001 B3KW39
BX161418 CAD61893 Q5H9R6
Q8WXH5
CR933659 CAI45958 Q5H9R6
Q8WXH5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOCS4 NP_543143 M.musculus Socs4 67296 Gene Info NP_543119 87
R.norvegicus Socs4 305828   NP_001100726 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)