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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL5, ribosomal protein L5
Sequence ID:NM_000969
RefSeqGene ID:NG_011779
Entrez Gene ID:6125
Ensembl ID:ENSG00000122406

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
DIAMOND-BLACKFAN ANEMIA 6 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 93297650 - 93307476

NM_000969 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1819329759393297673
821519329894593299014
1522679329910193299216
2684029330033593300469
4036059330174693301948
6067839330301293303189
7848729330610793306195
87310309330732293307479

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5736022Full LengthBC109370ribosomal protein L5
40146992Full LengthBC132970ribosomal protein L5
40146994Full LengthBC132972ribosomal protein L5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000960  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000969 NP_000960 P46777 Ribosomal_L18p

Related Sequences

 
mRNAGenPeptSwissProt
U14966 AAA85654 P46777
U76609 AAB18361 P46777
AF113210 AAG39281 P46777
BC001882 AAH01882 Q9BUV4
BC109370 AAI09371 P46777
BC132970 AAI32971 A2RUM7
BC132972 AAI32973 A2RUM7
AB055762 BAB62856  
AB208980 BAD92217 Q59GX9
AK222604 BAD96324 P46777
AK314720 BAG37264 A2RUM7
AK095815 BAG53138 B3KTM6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL5 NP_000960 R.norvegicus Rpl5 81763   NP_112361 99
M.musculus Gm14217 668936 Gene Info XP_001004898 96
D.melanogaster RpL5 3355124   NP_001036388 68
A.gambiae RL5_ANOGA 1279989   XP_319782 67
C.elegans rpl-5 174371   NP_495811 60
A.thaliana ATL5 822138   NP_566767 59
A.thaliana RPL5B 833970   NP_001190439 58
N.crassa NCU04331 3876725   XP_960578 53
S.cerevisiae RPL5 855972   NP_015194 51
S.pombe rpl502 2539680   NP_596399 50
S.pombe rpl501 2543642   NP_594180 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)