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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIM21, tripartite motif containing 21
Sequence ID:NM_003141
Entrez Gene ID:6737
Ensembl ID:ENSG00000132109

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.5Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 4406135 - 4414909

NM_003141 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1897444061264407082
975107544073864407486
1076109844081974408219
1099132944095294409759
1330142544108834410978
1426188244112314411687
1883194644148624414925

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3900540Full LengthBC010861tripartite motif-containing 21

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003132  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003141 NP_003132 P19474 zf-C3HC4
SPRY
zf-B_box

Related Sequences

 
mRNAGenPeptSwissProt
M34551 AAA36581 P19474
M62800 AAA36651 P19474
BC010861 AAH10861 P19474
AY742713 AAU89982 P19474
EU446706 ABZ92235  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIM21 NP_003132 M.musculus Trim21 20821 Gene Info NP_001076021 71
R.norvegicus Trim21 308901   NP_001076041 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)