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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TSPAN17, Tetraspanin 17
Sequence ID:NM_012171
NM_130465
NM_001006616
Entrez Gene ID:26262
Ensembl ID:ENSG00000048140

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 176074580 - 176079787

 Exon Info From UCSC:
NM_012171
NM_130465
NM_001006616

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3621871Full LengthBC010405tetraspanin 17
6646576Full LengthBC067105tetraspanin 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036303  NP_001006617  NP_569732  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001006616 NP_001006617   Tetraspannin
NM_012171 NP_036303   Tetraspannin
NM_130465 NP_569732   Tetraspannin

Related Sequences

 
mRNAGenPeptSwissProt
AF174603 AAF04524 Q96FV3
BC010405 AAH10405 Q96FV3
BC067105 AAH67105 Q96FV3
AY037146 AAK67627 Q96FV3
HQ447668 ADQ32153  
AK024427 BAB15717 Q9H7Q1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TSPAN17 NP_569732 M.musculus Tspan17 74257 Gene Info NP_083117 96
D.melanogaster Tsp86D 41310   NP_524309 46
D.melanogaster Tsp3A 31244   NP_525054 44
A.gambiae AgaP_AGAP002257 1269304   XP_307926 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)