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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LGALS2, lectin, galactoside-binding, soluble, 2
Sequence ID:NM_006498
RefSeqGene ID:NG_012096
Entrez Gene ID:3957
Ensembl ID:ENSG00000100079

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
MYOCARDIAL INFARCTIONESR1
F13A1
F7
GCLC
GCLM
ITGB3
LRP8
LTA
MIAT
OLR1
PSMA6
THBD
TNFSF4

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 37967920 - 37977411

NM_006498 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
171823796625337966418
1833423796658237966741
3434253796785537967937
4265433797590637976023

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5185491Full LengthBC059782lectin, galactoside-binding, soluble, 2
5189510IncompleteBC029063lectin, galactoside-binding, soluble, 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006489  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006498 NP_006489 P05162 Gal-bind_lectin

Related Sequences

 
mRNAGenPeptSwissProt
M14079 AAA36171 P05162
M87842 AAA59513 P05162
BC029063 AAH29063 Q6PIT8
BC059782 AAH59782 P05162
CR456512 CAG30398 P05162
CR541972 CAG46770 P05162
CR542000 CAG46797 P05162
CU013111 CAK54542  
CU013399 CAK54841  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LGALS2 NP_006489 R.norvegicus Lgals2 171134   NP_598283 67
M.musculus Lgals2 107753 Gene Info NP_079898 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)