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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CX3CL1, Chemokine (C-X3-C motif) ligand 1
Sequence ID:NM_002996
Entrez Gene ID:6376
Ensembl ID:ENSG00000006210

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 57410883 - 57418954

NM_002996 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11375740641357406549
1382585741354557413665
25932715741594157418953

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3502121Full LengthBC016164chemokine (C-X3-C motif) ligand 1
3503870Full LengthBC001163chemokine (C-X3-C motif) ligand 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002987  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002996 NP_002987 P78423 IL8

Related Sequences

 
mRNAGenPeptSwissProt
U84487 AAB49679 P78423
U91835 AAB50014 P78423
BC001163 AAH01163 P78423
BC016164 AAH16164 P78423
DQ890704 ABM81630  
DQ891871 ABM82797  
DQ893888 ABM84814  
DQ895059 ABM85985  
AB209037 BAD92274 Q59GS2
AK222692 BAD96412 Q53H89
AK223351 BAD97071 Q53FD8
AK313806 BAG36542 A0N0N7
CR457426 CAG33707 Q6I9S9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CX3CL1 NP_002987 R.norvegicus Cx3cl1 89808   NP_604450 70
M.musculus Cx3cl1 20312 Gene Info NP_033168 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)