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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RBM25, RNA binding motif protein 25
Sequence ID:NM_021239
Entrez Gene ID:58517
Ensembl ID:ENSG00000119707

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 73525240 - 73572690

 Exon Info From UCSC:
NM_021239

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020765Full LengthBC136775RNA binding motif protein 25
9020766Full LengthBC136776RNA binding motif protein 25
9052928Full LengthBC144407RNA binding motif protein 25
4248893IncompleteBC062440RNA binding motif protein 25
8322441IncompleteBC113389RNA binding motif protein 25
8322443IncompleteBC113391RNA binding motif protein 25

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067062  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021239 NP_067062 P49756 RRM_1
PWI

Related Sequences

 
mRNAGenPeptSwissProt
S67071 AAB28817 Q16083
L40392 AAC41999 P49756
BC062440 AAH62440 P49756
BC083496 AAH83496 P49756
BC111066 AAI11067 P49756
BC113389 AAI13390 P49756
BC113391 AAI13392 P49756
BC136775 AAI36776 P49756
BC136776 AAI36777 P49756
BC144407 AAI44408 P49756
AK026107 BAB15362 P49756
AK094697 BAG52915 P49756

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RBM25 NP_067062 M.musculus Rbm25 67039 Gene Info NP_081625 100
A.gambiae AgaP_AGAP004546 1274687   XP_313843 43
D.melanogaster CG4119 31481   NP_572242 40
C.elegans W04D2.6 259655   NP_506133 36
A.thaliana AT1G60200 842315   NP_176226 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)