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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. UBA52, ubiquitin A-52 residue ribosomal protein fusion product 1
Sequence ID:NM_001033930
NM_003333
RefSeqGene ID:NG_023288
Entrez Gene ID:7311
Ensembl ID:ENSG00000221983

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.1-p12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 18682667 - 18686048

 Exon Info From UCSC:
NM_001033930
NM_003333

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8069336Full LengthBC101830ubiquitin A-52 residue ribosomal protein fusion product 1
8069338Full LengthBC101832ubiquitin A-52 residue ribosomal protein fusion product 1
9052182Full LengthBC143668ubiquitin A-52 residue ribosomal protein fusion product 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003324  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001033930 NP_001029102 Q3MIH3  
NM_003333 NP_003324 Q3MIH3 ubiquitin
Ribosomal_L40e

Related Sequences

 
mRNAGenPeptSwissProt
BC101830 AAI01831 Q3MIH3
BC101832 AAI01833 Q3MIH3
BC143668 AAI43669 Q3MIH3
AF348700 AAK31162 P62987
AF545864 AAP97731 Q7Z4P3
AK314717 BAG37261 Q3MIH3
X56998 CAA40313 P62987
Q3MIH3
X56999 CAA40314 P62987
Q3MIH3
Y00361 CAA68439 P62987

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens UBA52 NP_003324 M.musculus Uba52 22186 Gene Info NP_063936 100
R.norvegicus Uba52 64156   NP_113875 100
A.gambiae AgaP_AGAP007927 1278028   XP_317555 98
D.melanogaster RpL40 33629   NP_476776 98
C.elegans ubq-2 176718   NP_499695 93
A.thaliana UBQ1 824425   NP_566969 92
A.thaliana AT2G36170 818189   NP_565836 92
P.falciparum PF13_0346 814305   XP_001350369 92
S.pombe uep1 2542428   NP_593923 91
S.pombe ubi1 2541768   NP_594398 91
N.crassa NCU05275 3878065   XP_961912 90
S.cerevisiae RPL40A 854658   NP_012118 90
S.cerevisiae RPL40B 853969   NP_013020 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)