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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MRPL16, mitochondrial ribosomal protein L16
Sequence ID:NM_017840
Entrez Gene ID:54948
Ensembl ID:ENSG00000166902

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 59573612 - 59578226

NM_017840 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
157125957360759574304
7138615957517359575321
8629275957732759577392
92811965957807659578344

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2823370Full LengthBC001040mitochondrial ribosomal protein L16
2823370Full LengthBC019269mitochondrial ribosomal protein L16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060310  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017840 NP_060310 Q9NX20 Ribosomal_L16

Related Sequences

 
mRNAGenPeptSwissProt
AF183428 AAG09697 Q9NX20
AF275806 AAG23818 Q9NX20
BC001040 AAH01040 Q9NX20
BC019269 AAH19269 Q9NX20
HQ447214 ADQ31701  
AK000491 BAA91202 Q9NX20
AB049642 BAB40847 Q9NX20
CR457117 CAG33398 Q9NX20

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MRPL16 NP_060310 M.musculus Mrpl16 94063 Gene Info NP_079882 84
R.norvegicus Mrpl16 293754   NP_001009647 84
D.melanogaster mRpL16 31150   NP_525041 52
A.gambiae AgaP_AGAP004985 1275811   XP_315089 50
C.elegans T04A8.11 188040   NP_497965 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)