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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PMF1, Polyamine-modulated factor 1
Sequence ID:NM_001199654
NM_007221
NM_001199653
NM_001199662
NM_001199661
NM_001199663
Entrez Gene ID:11243
Ensembl ID:ENSG00000160783

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 156182815 - 156209827

Transcript StartTranscript EndChromosomal Start Chromosomal End
1184156182783156182966
185290156202110156202215
291391156203418156203518
392587156206078156206273
5881080156209338156209830

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6148250Full LengthBC065031polyamine-modulated factor 1
3909927IncompleteBC033656polyamine-modulated factor 1
5760174IncompleteBC056417polyamine-modulated factor 1
6067207IncompleteBC050735polyamine-modulated factor 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001199653 NP_001186582    
NM_001199654 NP_001186583    
NM_001199661 NP_001186590    
NM_001199662 NP_001186591    
NM_001199663 NP_001186592    
NM_001199664 NP_001186593    
NM_007221 NP_009152 Q6P1K2  

Related Sequences

 
mRNAGenPeptSwissProt
AF141310 AAD50081 Q6P1K2
BC050735 AAH50735 Q6P1K2
BC056417 AAH56417 Q6P1K2
BC065031 AAH65031 Q6P1K2
DQ893741 ABM84667  
DQ890582 ABM92199  
EU832588 ACE86990  
EU832507 ACE87679  
AK124646 BAC85916 Q6ZVE6
AK289490 BAF82179 Q6P1K2
AK290260 BAF82949 Q6P1K2
AL080101 CAH10730 Q6P1K2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PMF1 NP_009152 R.norvegicus Pmf1 681050   XP_002729107 79
M.musculus Pmf1 67037 Gene Info NP_080204 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)