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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STXBP3, syntaxin binding protein 3
Sequence ID:NM_007269
Entrez Gene ID:6814
Ensembl ID:ENSG00000116266

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 109289353 - 109352148

 Exon Info From UCSC:
NM_007269

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4826366Full LengthBC038099syntaxin binding protein 3
5585614Full LengthBC047764syntaxin binding protein 3
5219755IncompleteBC028028syntaxin binding protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009200  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007269 NP_009200 O00186 Sec1

Related Sequences

 
mRNAGenPeptSwissProt
AF032922 AAC69606 O00186
BC038099 AAH38099 O00186
BC047764 AAH47764 O00186
D63506 BAA19482 O00186
AK223170 BAD96890 O00186
AK290134 BAF82823 O00186
AK291322 BAF84011 O00186
AK312910 BAG35756 O00186

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STXBP3 NP_009200 M.musculus Stxbp3a 20912 Gene Info NP_035634 92
R.norvegicus Stxbp3 114095   NP_446089 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)