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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TAF12, TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa
Sequence ID:NM_001135218
NM_005644
Entrez Gene ID:6883
Ensembl ID:ENSG00000120656

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 28931450 - 28969597

 Exon Info From UCSC:
NM_001135218
NM_005644

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3882343Full LengthBC011986TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005635  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135218 NP_001128690    
NM_005644 NP_005635 Q16514 TFIID_20kDa

Related Sequences

 
mRNAGenPeptSwissProt
U57693 AAC50600 Q16514
U57693 AAC50601 Q16514
BC011986 AAH11986 Q16514
BT007031 AAP35678 Q16514
DQ893739 ABM84665  
DQ890580 ABM92197  
D50544 BAA09112 Q16514
X84002 CAA58826 Q16514

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TAF12 NP_001128690 M.musculus Taf12 66464 Gene Info NP_079855 96
A.gambiae AgaP_AGAP003135 1273807   XP_312822 58
D.melanogaster Taf12 41406   NP_524320 56
S.pombe taf12 2542785   NP_594289 43
N.crassa NCU02223 3875783   XP_959636 43
A.thaliana TAF12 820168   NP_566367 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)