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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HSF1, heat shock transcription factor 1
Sequence ID:NM_005526
Entrez Gene ID:3297
Ensembl ID:ENSG00000185122

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 145535898 - 145538380

 Exon Info From UCSC:
NM_005526

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3528599Full LengthBC014638heat shock transcription factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005517  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005526 NP_005517 Q00613 HSF_DNA-bind
Vert_HS_TF

Related Sequences

 
mRNAGenPeptSwissProt
M64673 AAA52695 Q00613
AF299094 AAG23698 Q9HAV2
BC014638 AAH14638 Q00613
BT007351 AAP36015 Q00613
DQ893859 ABM84785  
AK222497 BAD96217 Q53HT3
AK290975 BAF83664 Q00613
AK054762 BAG51421 B3KNQ9
AK125467 BAG54202 B3KWP0
AK300205 BAG61976 B4DTG4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HSF1 NP_005517 R.norvegicus Hsf1 79245   NP_077369 91
M.musculus Hsf1 15499 Gene Info NP_032322 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)