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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RABGEF1, RAB guanine nucleotide exchange factor (GEF) 1
Sequence ID:NM_014504
Entrez Gene ID:27342
Ensembl ID:ENSG00000243335

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 66205719 - 66276448

NM_014504 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11376620564266205778
1383336623686966237064
3345006624021366240379
5016676624866166248827
6687496626049766260578
7508826626236066262492
8839746626430966264400
97512316627012666270382
123217346627387266274374
173738076627437566276445

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4420279Full LengthBC015330RAB guanine nucleotide exchange factor (GEF) 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055319  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014504 NP_055319   zf-A20
VPS9

Related Sequences

 
mRNAGenPeptSwissProt
BC015330 AAH15330 Q9UJ41
BT007107 AAP35771 Q9UJ41
DQ230533 ABA64473 Q9UJ41
DQ230534 ABA64474 Q9UJ41
DQ230535 ABA64475 Q3HKR1
AK223329 BAD97049 Q9UJ41
AK290678 BAF83367 A8K3R3
AK001702 BAG50963 B3KMF1
AK303006 BAG64139 B4DZM7
AJ250042 CAB57359 Q9UJ41

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RABGEF1 NP_055319 M.musculus Rabgef1 56715 Gene Info NP_064367 96
R.norvegicus Rabgef1 360797   NP_001101803 95
C.elegans rabx-5 176481   NP_499337 37
D.melanogaster CG9139 38144   NP_612093 36
A.gambiae AgaP_AGAP005551 1276236   XP_315556 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)