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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VCP, Valosin containing protein
Sequence ID:NM_007126
RefSeqGene ID:NG_007887
Entrez Gene ID:7415
Ensembl ID:ENSG00000165280

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
AMYOTROPHIC LATERAL SCLEROSIS 14, WITH OR WITHOUT FRONTOTEMPORAL DEMENTIA 
INCLUSION BODY MYOPATHY WITH EARLY-ONSET PAGET DISEASE ANDFRONTOTEMPORAL DEMENTIA 

Cytogenetic Location (from UniGene)

Cytogenetic Location:9p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 35056901 - 35072564

 Exon Info From UCSC:
NM_007126

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6502535Full LengthBC110913valosin-containing protein
40108357Full LengthBC122550valosin-containing protein
40108360Full LengthBC121794valosin-containing protein
2988964IncompleteBC007562valosin-containing protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009057  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007126 NP_009057 P55072 AAA
CDC48_N

Related Sequences

 
mRNAGenPeptSwissProt
AF100752 AAD43016 P55072
AF313485 AAG29873 Q9HAP1
AF313486 AAG29874 Q9HAP0
BC007562 AAH07562 Q96IF9
BC110913 AAI10914 P55072
BC121794 AAI21795 P55072
BC122550 AAI22551 Q0IIN5
AK312310 BAG35235 P55072
Z70768 CAA94809 P55072
AL137377 CAB70717 Q9NTC4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VCP NP_009057 M.musculus Vcp 269523 Gene Info NP_033529 100
R.norvegicus Vcp 116643   NP_446316 100
A.gambiae AgaP_AGAP005630 1276315   XP_315644 85
D.melanogaster TER94 36040   NP_001097249 84
C.elegans cdc-48.2 174309   NP_495705 80
C.elegans cdc-48.1 174624   NP_496273 79
A.thaliana AT3G53230 824489   NP_190891 78
A.thaliana CDC48 820142   NP_187595 78
A.thaliana AT5G03340 831870   NP_568114 78
N.crassa NCU00018 3873143   XP_957005 74
S.pombe cdc48 2542744   NP_593287 72
S.cerevisiae CDC48 851431   NP_010157 71
P.falciparum PFF0940c 3885942   XP_966179 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)