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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATP13A3, ATPase type 13A3
Sequence ID:NM_024524
Entrez Gene ID:79572
Ensembl ID:ENSG00000133657

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q29Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 194126493 - 194168687

 Exon Info From UCSC:
NM_024524

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100066336Full LengthBC166610ATPase type 13A3
4797092IncompleteBC037805ATPase type 13A3
6063503IncompleteBC106085ATPase type 13A3

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024524 NP_078800 Q9H7F0  

Related Sequences

 
mRNAGenPeptSwissProt
BC166610 AAI66610 Q9H7F0
AK024639 BAB14942 Q9H7F0
AK075094 BAC11398 Q9H7F0
AJ306929 CAC84902 Q9H7F0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP13A3 NP_078800 M.musculus Atp13a3 224088 Gene Info NP_001121566 90
A.gambiae AgaP_AGAP011271 1270659   XP_309375 46
C.elegans W08D2.5 177822   NP_501755 45
D.melanogaster CG32000 317815   NP_001096849 44
C.elegans K07E3.7 181067   NP_001024768 43
S.pombe SPCC1672.11c 2538749   NP_587882 41
C.elegans Y59H11AR.2 177664   NP_001023542 41
S.cerevisiae YPK9 854466   NP_014934 41
N.crassa NCU10143 5847924   XP_001728527 40
P.falciparum PfATPase1 812976   XP_001351718 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)