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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX30, SRY (sex determining region Y)-box 30
Sequence ID:NM_007017
NM_178424
Entrez Gene ID:11063
Ensembl ID:ENSG00000039600

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 157052686 - 157079372

 Exon Info From UCSC:
NM_007017
NM_178424

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5172577Full LengthBC033492SRY (sex determining region Y)-box 30

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008948  NP_848511  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007017 NP_008948   HMG_box
NM_178424 NP_848511 O94993 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC033492 AAH33492 O94993
AB022083 BAA37146 O94993
AB022441 BAA37149 O94993
AK302162 BAG63529 B4DXW7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX30 NP_848511 M.musculus Sox30 214105 Gene Info NP_775560 79
R.norvegicus Sox30 689918   XP_001072526 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)