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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ACSS1, acyl-CoA synthetase short-chain family member 1
Sequence ID:NM_001252675
NM_001252676
NM_001252677
NM_032501
Entrez Gene ID:84532
Ensembl ID:ENSG00000154930

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20p11.23-p11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 24986867 - 25002129


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4838976Full LengthBC055008acyl-CoA synthetase short-chain family member 1
5260496Full LengthBC044588acyl-CoA synthetase short-chain family member 1
5298849Full LengthBC039261acyl-CoA synthetase short-chain family member 1
40023706IncompleteBC114612acyl-CoA synthetase short-chain family member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_115890  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001252675 NP_001239604      
NM_001252676 NP_001239605      
NM_001252677 NP_001239606      
NM_032501 NP_115890 Q9NUB1 EC 6.2.1.1 AMP-binding

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC039261 AAH39261 Q9NUB1 EC 6.2.1.1
BC044588 AAH44588 Q9NUB1
Q7Z5G3
EC 6.2.1.1
BC055008 AAH55008 Q7Z5G3  
BC114612 AAI14613 Q1RMZ4  
AK024424 BAB15714 Q9H7Q4  
AB058749 BAB47475 Q9NUB1 EC 6.2.1.1
AK027817 BAB55390 Q9NUB1 EC 6.2.1.1
AK090851 BAC03530 Q8N2B9  
AK092295 BAC03853 Q9NUB1 EC 6.2.1.1
AK125058 BAC86035 Q6ZV30  
AK127566 BAG54524 B3KXL2  
AK296306 BAG59005 B4DJZ3  
AL833041 CAH56303 Q658R1  
AL832939 CAH56320 Q658X4  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ACSS1 NP_115890 M.musculus Acss1 68738 Gene Info NP_542142 88
R.norvegicus Acss1 296259   NP_001099994 87
N.crassa NCU06836 3879801   XP_963677 49
S.cerevisiae ACS2 850846   NP_013254 48
S.pombe SPCC191.02c 2539546   NP_588291 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)