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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATG16L1, autophagy related 16-like 1 (S. cerevisiae)
Sequence ID:NM_001190266
NM_001190267
NM_017974
NM_030803
NM_198890
RefSeqGene ID:NG_023038
Entrez Gene ID:55054
Ensembl ID:ENSG00000085978

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
INFLAMMATORY BOWEL DISEASE 10 

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q37.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 234160370 - 234204316

 Exon Info From UCSC:
NM_001190266
NM_001190267
NM_017974
NM_030803
NM_198890

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3030066IncompleteBC013411ATG16 autophagy related 16-like 1 (S. cerevisiae)
3949072IncompleteBC006253ATG16 autophagy related 16-like 1 (S. cerevisiae)
6651664IncompleteBC071846ATG16 autophagy related 16-like 1 (S. cerevisiae)
9052418IncompleteBC143900ATG16 autophagy related 16-like 1 (S. cerevisiae)
40125888IncompleteBC117337ATG16 autophagy related 16-like 1 (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_110430  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190266 NP_001177195    
NM_001190267 NP_001177196    
NM_017974 NP_060444    
NM_030803 NP_110430 Q53SV2
Q676U5
WD40
ATG16
NM_198890 NP_942593    

Related Sequences

 
mRNAGenPeptSwissProt
BC071846 AAH71846 Q676U5
BC117337 AAI17338 Q17RG0
BC143900 AAI43901 B7ZLM5
AY358182 AAQ88549 Q676U5
AY398617 AAR32130 Q676U5
EF079889 ABN48554 Q676U5
EF079890 ABN48555 Q676U5
EF560734 ABQ59044 A5YM60
AK000897 BAA91413 Q9NWG8
AK026330 BAB15448 Q676U5
AK024453 BAB15743 Q9H7M5
AK027854 BAB55412 Q676U5
AK074434 BAB85082 Q8TCI4
AK123876 BAC85713 Q676U5
AL834526 CAD39182 Q676U5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATG16L1 NP_110430 M.musculus Atg16l1 77040 Gene Info NP_084122 94
R.norvegicus Atg16l1 363278   NP_001102279 94
D.melanogaster CG31033 326115   NP_733313 42
A.gambiae AgaP_AGAP002315 1273655   XP_312657 41
C.elegans atg-16.1 180717   NP_508768 35
C.elegans atg-16.2 174067   NP_495299 34
A.thaliana AT5G50230 835088   NP_199834 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)