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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIM25, Tripartite motif containing 25
Sequence ID:NM_005082
Entrez Gene ID:7706
Ensembl ID:ENSG00000121060

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q23.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 54968028 - 54991393

NM_005082 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
243215496527054969589
432244205497270354972801
442145045497288154972964
450545315497328654973312
453245975497647554976540
459847575497877954978938
475849915498161554981848
499250875498582854985923
508857445499075254991408

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4338818Full LengthBC042541tripartite motif-containing 25
4419084Full LengthBC016924tripartite motif-containing 25
4524805IncompleteBC038247tripartite motif-containing 25
6008783IncompleteBC053605tripartite motif-containing 25

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005073  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_005082 NP_005073 Q14258 EC 6.3.2.19
EC 6.3.2.n3
zf-C3HC4
SPRY

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC016924 AAH16924 Q14258 EC 6.3.2.19
EC 6.3.2.n3
BC042541 AAH42541 Q14258 EC 6.3.2.19
EC 6.3.2.n3
D21205 BAA04747 Q14258 EC 6.3.2.19
EC 6.3.2.n3
AB208994 BAD92231 Q59GW5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIM25 NP_005073 R.norvegicus Trim25 494338   NP_001009536 74
M.musculus Trim25 217069 Gene Info NP_033572 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta