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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
Sequence ID:NM_145691
RefSeqGene ID:NG_012824
Entrez Gene ID:91647
Ensembl ID:ENSG00000171953

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 17921576 - 17942471

NM_145691 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16671792133317921999
6687831792443617924551
7848961792505817925170
8979771792793717928017
97810751792963217929729
107612211793154517931690
122212661793192817931972
126715521794219417942479

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3836710Full LengthBC004114ATP synthase mitochondrial F1 complex assembly factor 2
4903646Full LengthBC032126ATP synthase mitochondrial F1 complex assembly factor 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663729  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145691 NP_663729 Q8N5M1 ATP12

Related Sequences

 
mRNAGenPeptSwissProt
BC004114 AAH04114 Q8N5M1
BC032126 AAH32126 Q8N5M1
AY203943 AAP34466 Q8N5M1
AK290257 BAF82946 Q8N5M1
AK294487 BAG57709 B4DG98
AM393241 CAL38119 Q8N5M1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATPAF2 NP_663729 R.norvegicus Atpaf2 303190   NP_001100476 89
M.musculus Atpaf2 246782 Gene Info NP_663402 87
D.melanogaster l(2)k14505 35399   NP_610102 43
A.gambiae AgaP_AGAP008876 1279845   XP_319622 41
S.pombe atp12 2543406   NP_593355 33
A.thaliana AT5G40660 834066   NP_198882 33
N.crassa NCU00676 3881941   XP_965816 31
C.elegans Y116A8C.27 191004   NP_503029 30
S.cerevisiae ATP12 853259   NP_012355 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)