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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEMA3E, Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
Sequence ID:NM_012431
NM_001178129
RefSeqGene ID:NG_021242
Entrez Gene ID:9723
Ensembl ID:ENSG00000170381

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CHARGE SYNDROMECHD7
CHD7

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q21.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 82993221 - 83278324

 Exon Info From UCSC:
NM_012431
NM_001178129

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862593Full LengthBC152458sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
9021574Full LengthBC140706sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
9052858Full LengthBC144338sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036563  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001178129 NP_001171600    
NM_012431 NP_036563 O15041 ig
Sema

Related Sequences

 
mRNAGenPeptSwissProt
BC140706 AAI40707  
BC144338 AAI44339  
BC152458 AAI52459  
AB002329 BAA20789 O15041
AK297209 BAG59693 B4DLY1
AK303925 BAG64853 B4E1P1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEMA3E NP_036563 M.musculus Sema3e 20349 Gene Info NP_035478 90
R.norvegicus Sema3e 296789   NP_001100049 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)