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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MAGED1, melanoma antigen family D, 1
Sequence ID:NM_001005332
NM_001005333
NM_006986
RefSeqGene ID:NG_012559
Entrez Gene ID:9500
Ensembl ID:ENSG00000179222

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 51638706 - 51645026

 Exon Info From UCSC:
NM_001005332
NM_001005333
NM_006986

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4026470Full LengthBC014070melanoma antigen family D, 1
5216354Full LengthBC032473melanoma antigen family D, 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001005332  NP_008917  NP_001005333  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001005332 NP_001005332 Q9Y5V3 MAGE
NM_001005333 NP_001005333   MAGE
NM_006986 NP_008917 Q9Y5V3 MAGE

Related Sequences

 
mRNAGenPeptSwissProt
AF124440 AAD31421 Q9Y5V3
AF217963 AAG09704 Q9Y5V3
AF258554 AAG23757 Q9Y5V3
AF132205 AAG35551 Q9Y5V3
BC014070 AAH14070 Q9Y5V3
BC032473 AAH32473 Q9Y5V3
AF300328 AAQ14483 Q9Y5V3
AK074092 BAB84918 Q8TEN0
AK298574 BAG60766 B4DQ04
AL133628 CAB63752 Q9Y5V3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MAGED1 NP_001005333 M.musculus Maged1 94275 Gene Info NP_062765 89
R.norvegicus Maged1 84469   NP_445861 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)