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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LIMA1, LIM domain and actin binding 1
Sequence ID:NM_001113546
NM_001113547
NM_001243775
NM_016357
RefSeqGene ID:NG_029859
Entrez Gene ID:51474
Ensembl ID:ENSG00000050405

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 50570820 - 50677289

 Exon Info From UCSC:
NM_001113546
NM_001113547
NM_016357

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5115521Full LengthBC110815LIM domain and actin binding 1
9020753Full LengthBC136763LIM domain and actin binding 1
3452714IncompleteBC001247LIM domain and actin binding 1
3854371IncompleteBC010664LIM domain and actin binding 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057441  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001113546 NP_001107018    
NM_001113547 NP_001107019    
NM_001243775 NP_001230704    
NM_016357 NP_057441 Q9UHB6 LIM

Related Sequences

 
mRNAGenPeptSwissProt
AF198454 AAF23755 Q9UHB6
AF198455 AAF23756 Q9UHB6
AF157325 AAF67491 Q9UHB6
AF218025 AAG17267 Q9UHB6
BC001247 AAH01247 Q9UHB6
BC010664 AAH10664 Q9UHB6
BC110815 AAI10816 Q9UHB6
BC136763 AAI36764 Q9UHB6
AK000057 BAA90914 Q9UHB6
AK000335 BAA91092 Q9UHB6
AK000372 BAA91120 Q9UHB6
AK023649 BAB14625 Q9UHB6
AB209512 BAD92749 Q59FE8
AK222971 BAD96691 Q53GG0
AK314447 BAG37056 Q9UHB6
AK096172 BAG53224 B3KTW2
AK297766 BAG60114 B4DN52
AL136911 CAB66845 Q9UHB6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LIMA1 NP_001107018 M.musculus Lima1 65970 Gene Info NP_001107017 77
R.norvegicus Lima1 300228   XP_217039 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta