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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C1orf123, Chromosome 1 open reading frame 123
Sequence ID:NM_017887
Entrez Gene ID:54987
Ensembl ID:ENSG00000162384

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p32.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 53679771 - 53686289

NM_017887 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
376715367977353680407
6727375368166253681727
7388155368245353682530
8168475368384353683874
8489295368408553684166
9309865368453853684594
98710705368593253686015
107111185368624153686288

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4093763Full LengthBC010908chromosome 1 open reading frame 123

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060357  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017887 NP_060357 Q9NWV4 DUF866

Related Sequences

 
mRNAGenPeptSwissProt
BC010908 AAH10908 Q9NWV4
HQ448714 ADQ33192  
AK000587 BAA91272 Q9NWV4
CR457246 CAG33527 Q9NWV4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C1orf123 NP_060357 R.norvegicus RGD1559786 298384   NP_001029304 96
M.musculus 0610037L13Rik 74098 Gene Info NP_083030 95
C.elegans F46B6.12 179370   NP_505521 49
D.melanogaster CG4646 36459   NP_610848 47
A.gambiae AgaP_AGAP003919 1278742   XP_318370 45
A.thaliana AT4G32930 829430   NP_567911 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)