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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARF6, ADP-ribosylation factor 6
Sequence ID:NM_001663
Entrez Gene ID:382
Ensembl ID:ENSG00000165527

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 50360387 - 50361734

NM_001663 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11405035973550359874
14139385035997350363770

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3626100Full LengthBC008918ADP-ribosylation factor 6
3544168IncompleteBC002952ADP-ribosylation factor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001654  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001663 NP_001654 P62330 Arf

Related Sequences

 
mRNAGenPeptSwissProt
M57763 AAA90928 P62330
AF047432 AAC39877 P62330
BC008918 AAH08918 P62330
AF493885 AAM12599 P62330
BT019868 AAV38671 Q5U025
AK313790 BAG36527 P62330
CR541939 CAG46737 Q6FH17
CR541964 CAG46762 P62330

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARF6 NP_001654 M.musculus Arf6 11845 Gene Info NP_031507 100
R.norvegicus Arf6 79121   NP_077066 100
A.gambiae AgaP_AGAP006890 1270190   XP_001688115 97
D.melanogaster Arf51F 36699   NP_725454 97
C.elegans arf-6 191608   NP_503011 89
S.pombe arf6 2539937   NP_596822 75
N.crassa NCU07173 3873573   XP_957398 71
S.cerevisiae ARF3 854261   NP_014737 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)