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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TNFSF13B, tumor necrosis factor (ligand) superfamily, member 13b
Sequence ID:NM_001145645
NM_006573
RefSeqGene ID:NG_029524
Entrez Gene ID:10673
Ensembl ID:ENSG00000102524

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q32-q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 108922126 - 108959362

 Exon Info From UCSC:
NM_001145645
NM_006573

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4719315Full LengthBC020674tumor necrosis factor (ligand) superfamily, member 13b

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006564  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145645 NP_001139117    
NM_006573 NP_006564 Q9Y275 TNF

Related Sequences

 
mRNAGenPeptSwissProt
AF132600 AAD21092 Q9Y275
AF116456 AAD25356 Q9Y275
AF136293 AAD29421 Q9Y275
AF186114 AAF01432 Q9Y275
AF134715 AAF60219 Q9Y275
BC020674 AAH20674 Q9Y275
AY129225 AAN08421 Q9Y275
AY129226 AAN08422 Q8IZI6
AY129227 AAN08423 Q8IZI5
AY129228 AAN08424 Q8IZI4
AY302751 AAP83164 Q9Y275
AY358881 AAQ89240 Q9Y275
DQ891413 ABM82339  
EU176634 ABW03435  
HM636064 ADK91575 E0ADT7
CR541818 CAG46617 Q9Y275

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TNFSF13B NP_006564 M.musculus Tnfsf13b 24099 Gene Info NP_296371 70
R.norvegicus Tnfsf13b 498666   NP_001102582 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta