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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CNTF, Ciliary neurotrophic factor
Sequence ID:NM_053023
NM_001197051
NM_000614
RefSeqGene ID:NG_008776
Entrez Gene ID:1270
Ensembl ID:ENSG00000242689

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 58346648 - 58388515

 Exon Info From UCSC:
NM_053023
NM_000614

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7217016Full LengthBC069167ciliary neurotrophic factor
30407481Full LengthBC068030ciliary neurotrophic factor
30915287Full LengthBC074964ciliary neurotrophic factor
30915506Full LengthBC074963ciliary neurotrophic factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000605  NP_444251  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000614 NP_000605 P26441 CNTF
NM_001197051 NP_001183980    
NM_053023 NP_444251 Q96JP5 zf-C2H2

Related Sequences

 
mRNAGenPeptSwissProt
S72921 AAB31818  
BC051743 AAH51743 Q96JP5
BC068030 AAH68030 P26441
BC069167 AAH69167  
BC074963 AAH74963 P26441
BC074964 AAH74964 P26441
AF305825 AAK55528 Q96JQ9
AF310246 AAL09963 Q96JP5
AB056107 BAB63373 Q96JP5
AB057443 BAB63374 Q96JP5
AK314118 BAG36809 P26441
AK295700 BAG58548 B4DIN6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNTF NP_000605 R.norvegicus Cntf 25707   NP_037298 84
M.musculus Cntf 12803   NP_740756 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)