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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLIP1, CAP-GLY domain containing linker protein 1
Sequence ID:NM_001247997
NM_002956
NM_198240
RefSeqGene ID:NG_030352
Entrez Gene ID:6249
Ensembl ID:ENSG00000130779

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 122755980 - 122848564

 Exon Info From UCSC:
NM_002956
NM_198240

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7961952Full LengthBC114213CAP-GLY domain containing linker protein 1
8992021Full LengthBC126305CAP-GLY domain containing linker protein 1
40125760Full LengthBC117209CAP-GLY domain containing linker protein 1
5742243IncompleteBC047895CAP-GLY domain containing linker protein 1
5921093IncompleteBC062543CAP-GLY domain containing linker protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002947  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001247997 NP_001234926 P30622  
NM_002956 NP_002947 P30622 CAP_GLY
NM_198240 NP_937883    

Related Sequences

 
mRNAGenPeptSwissProt
M97501 AAA35693 P30622
AF045652 AAC03549 O43666
AF045653 AAC03550 O43667
BC047895 AAH47895 Q86WU4
BC062543 AAH62543 Q6P5Z9
BC114213 AAI14214 P30622
BC117209 AAI17210 P30622
BC126305 AAI26306 P30622
AY563000 AAS75590 Q6Q318
AB209115 BAD92352 Q59GJ4
AK126990 BAG54417 B3KXA5
X64838 CAA46050 P30622

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLIP1 NP_002947 M.musculus Clip1 56430 Gene Info NP_062739 90
A.gambiae AgaP_AGAP009210 1280169   XP_319987 31
D.melanogaster CLIP-190 35042   NP_609835 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta