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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TPCN1, two pore segment channel 1
Sequence ID:NM_001143819
NM_017901
Entrez Gene ID:53373
Ensembl ID:ENSG00000186815

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 113659275 - 113736387

 Exon Info From UCSC:
NM_001143819
NM_017901

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862535Full LengthBC152423two pore segment channel 1
9020785Full LengthBC136795two pore segment channel 1
9020786Full LengthBC136796two pore segment channel 1
40148126Full LengthBC142664two pore segment channel 1
40148827Full LengthBC150203two pore segment channel 1
3010316IncompleteBC007419two pore segment channel 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060371  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143819 NP_001137291    
NM_017901 NP_060371 Q9ULQ1 Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC136795 AAI36796 Q9ULQ1
BC136796 AAI36797 Q9ULQ1
BC142664 AAI42665 A5PKY2
BC150203 AAI50204 Q9ULQ1
BC152423 AAI52424 Q9ULQ1
AY083666 AAM01199 Q9ULQ1
AB032995 BAA86483 Q9ULQ1
AK000619 BAA91290 Q9NWT7
AK075071 BAC11385 Q9ULQ1
AK093490 BAG52729 B3KSG7
AK295022 BAH11951 B7Z2R5
AK296268 BAH12298 B7Z3R2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TPCN1 NP_001137291 M.musculus Tpcn1 252972 Gene Info NP_665852 91
R.norvegicus Tpcn1 246215   NP_647548 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)