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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NUP98, nucleoporin 98kDa
Sequence ID:NM_005387
NM_016320
NM_139131
NM_139132
Entrez Gene ID:4928
Ensembl ID:ENSG00000110713

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.5Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 3733064 - 3818777

 Exon Info From UCSC:
NM_005387
NM_016320
NM_139131
NM_139132

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5179730Full LengthBC041136nucleoporin 98kDa
3881182IncompleteBC012906nucleoporin 98kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005378  NP_624357  NP_624358  NP_057404  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005387 NP_005378   Nucleoporin2
NM_016320 NP_057404   Nucleoporin2
NM_139131 NP_624357   Nucleoporin2
NM_139132 NP_624358   Nucleoporin2

Related Sequences

 
mRNAGenPeptSwissProt
U41815 AAC50366 P52948
AF071076 AAD22395 P52948
AF071077 AAD22396 P52948
AF116074 AAF19342 P52948
BC012906 AAH12906 P52948
BC041136 AAH41136 P52948
AF231130 AAL56659 P52948
BT007349 AAP36013 P52948
AB040538 BAB18537 P52948
AK292882 BAF85571 A8KA17
AK301512 BAG63020 B4DWF8
AL133601 CAB63736 P52948
AL137613 CAB70842 P52948

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NUP98 NP_057404 R.norvegicus Nup98 81738   NP_112336 91
A.gambiae AgaP_AGAP002351 1273613   XP_312609 40
D.melanogaster Nup98 42816   NP_651187 38
A.thaliana SAR3 844407   NP_178183 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)