Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HPCAL4, hippocalcin like 4
Sequence ID:NM_016257
Entrez Gene ID:51440
Ensembl ID:ENSG00000116983

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 40147561 - 40157361

NM_016257 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2637794014465140148404
378039954014960840149823
399641654015011340150282
416642774015697740157088

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4811834Full LengthBC030827hippocalcin like 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057341  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016257 NP_057341 Q9UM19 efhand

Related Sequences

 
mRNAGenPeptSwissProt
BC030827 AAH30827 Q9UM19
DQ892340 ABM83266  
DQ895545 ABM86471  
AB001105 BAA86892 Q9UM19
AK312314 BAG35239 Q9UM19
AK294412 BAG57662 B4DG51
AK294813 BAG57930 B4DGW9
AL136591 CAB66526 Q9UM19
AM392661 CAL37539  
AM393588 CAL38465  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HPCAL4 NP_057341 M.musculus Hpcal4 170638 Gene Info NP_778163 99
R.norvegicus Hpcal4 50872   NP_059053 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)