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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. UBE2N, ubiquitin-conjugating enzyme E2N
Sequence ID:NM_003348
Entrez Gene ID:7334
Ensembl ID:ENSG00000177889

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 93802147 - 93802947

NM_003348 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1917849380208993803854
178519259380450993804649
192621729380482893805074
217325689383563093836025

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822013Full LengthBC000396ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast)
2900313Full LengthBC003365ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast)
6503770Full LengthBC108704ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003339  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_003348 NP_003339 P61088 EC 6.3.2.19 UQ_con

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC000396 AAH00396 P61088 EC 6.3.2.19
BC003365 AAH03365 P61088 EC 6.3.2.19
BC108704 AAI08705 P61088 EC 6.3.2.19
BT006873 AAP35519 P61088 EC 6.3.2.19
DQ896763 ABM87762    
EU176463 ABW03914    
EU176466 ABW03917    
D83004 BAA11675 P61088 EC 6.3.2.19

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens UBE2N NP_003339 A.gambiae AgaP_AGAP005197 1274904   XP_314098 83
A.thaliana UBC35 844224   NP_849902 80
D.melanogaster ben 32358   NP_001162752 80
N.crassa NCU02113 3880256   XP_964107 73
S.cerevisiae UBC13 851666   NP_010377 70
S.pombe ubc13 2542925   NP_594929 69
P.falciparum PFE1350c 813086   XP_001351827 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)