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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CTDSP2, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
Sequence ID:NM_005730
Entrez Gene ID:10106
Ensembl ID:ENSG00000175215

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q14.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 58213709 - 58240522

NM_005730 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2138195821371158217509
382040055821768658217871
400640985821800958218101
409941555822012858220184
415642575822077858220879
425842965822133458221372
429744455822323058223378
444650385824015458240746

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5756196Full LengthBC065920CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005721  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_005730 NP_005721 O14595 EC 3.1.3.16 NIF

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U81556 AAB39318 Q99809  
AF000152 AAB71816 O14595 EC 3.1.3.16
AF022231 AAD09331 O14595 EC 3.1.3.16
BC065920 AAH65920 O14595 EC 3.1.3.16
AY279531 AAP34399 O14595 EC 3.1.3.16
HQ448049 ADQ32530    
AK291289 BAF83978 O14595 EC 3.1.3.16
AK294930 BAG58009 B4DH48  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTDSP2 NP_005721 M.musculus Ctdsp2 52468 Gene Info NP_001106941 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)