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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ITGA7, integrin, alpha 7
Sequence ID:NM_001144996
NM_001144997
NM_002206
RefSeqGene ID:NG_012343
Entrez Gene ID:3679
Ensembl ID:ENSG00000135424

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 56078355 - 56101656

 Exon Info From UCSC:
NM_001144996
NM_001144997
NM_002206

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5284443Full LengthBC050280integrin, alpha 7
5549463IncompleteBC047907integrin, alpha 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002197  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001144996 NP_001138468    
NM_001144997 NP_001138469    
NM_002206 NP_002197   Integrin_alpha
FG-GAP
Integrin_alpha2

Related Sequences

 
mRNAGenPeptSwissProt
AF034833 AAB87696 Q13683
AF052050 AAC18968 Q13683
AF032108 AAC39708 Q13683
AF072132 AAC80458 Q13683
BC050280 AAH50280 Q13683
AY358882 AAQ89241 Q13683
AB210036 BAE06118 Q4LE35
AK022548 BAG51088 B3KMS6
AK304864 BAG65602 Q13683
X74295 CAA52348 Q13683

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ITGA7 NP_001138468 M.musculus Itga7 16404 Gene Info NP_032424 87
R.norvegicus Itga7 81008   NP_110469 86
A.gambiae AgaP_AGAP000307 1271955   XP_310816 37
D.melanogaster mew 32275   NP_511145 36
C.elegans ina-1 176296   NP_499032 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)