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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VDR, vitamin D (1,25- dihydroxyvitamin D3) receptor
Sequence ID:NM_000376
NM_001017535
NM_001017536
RefSeqGene ID:NG_008731
Entrez Gene ID:7421
Ensembl ID:ENSG00000111424

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
OSTEOPOROSISCALCR
COL1A1
COL1A2
IL6
LRP5
PDLIM4

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 48238528 - 48272896

 Exon Info From UCSC:
NM_000376
NM_001017535

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30343975Full LengthBC060832vitamin D (1,25- dihydroxyvitamin D3) receptor
5181453IncompleteBC033465vitamin D (1,25- dihydroxyvitamin D3) receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001017535  NP_000367  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000376 NP_000367 P11473 Hormone_recep
zf-C4
NM_001017535 NP_001017535 P11473 Hormone_recep
zf-C4
NM_001017536 NP_001017536    

Related Sequences

 
mRNAGenPeptSwissProt
J03258 AAA61273 P11473
M65208 AAA61274 P11473
AF026260 AAB95155 P11473
BC060832 AAH60832 P11473
EU446665 ABZ92194  
EU831857 ACE86616  
EU831779 ACE87297  
HQ692836 ADZ17347 F1D8P8
AK312267 BAG35198 P11473
AK299446 BAG61419 B4DRV7
AB307700 BAH02291 B6ZGT0
X67482 CAA47824 P11473

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VDR NP_001017536 R.norvegicus Vdr 24873   NP_058754 90
M.musculus Vdr 22337 Gene Info NP_033530 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta