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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. H2AFJ, H2A histone family, member J
Sequence ID:NM_177925
Entrez Gene ID:55766
Ensembl ID:ENSG00000246705

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 14927515 - 14930936

NM_177925 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
136651492726914930933

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3354610Full LengthBC003602H2A histone family, member J

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_808760  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177925 NP_808760 Q9BTM1 Histone

Related Sequences

 
mRNAGenPeptSwissProt
BC003602 AAH03602 Q9BTM1
HQ447950 ADQ32434  
AK001765 BAA91894 Q9BTM1
AK303301 BAG64375 B4E0B3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens H2AFJ NP_808760 M.musculus H2afj 232440 Gene Info NP_808356 98
R.norvegicus H2afj 690795   NP_001103080 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)