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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TPI1, Triosephosphate isomerase 1
Sequence ID:NM_001258026
NM_001159287
NM_000365
RefSeqGene ID:NG_011948
Entrez Gene ID:7167
Ensembl ID:ENSG00000111669

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 6976696 - 6979992

 Exon Info From UCSC:
NM_001159287
NM_000365

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3829453Full LengthBC015100triosephosphate isomerase 1
3956298Full LengthBC011611triosephosphate isomerase 1
4126160Full LengthBC009329triosephosphate isomerase 1
4244564Full LengthBC007086triosephosphate isomerase 1
4296431Full LengthBC017917triosephosphate isomerase 1
4298901Full LengthBC007812triosephosphate isomerase 1
6725406Full LengthBC070129triosephosphate isomerase 1
3909707IncompleteBC017165triosephosphate isomerase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000356  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000365 NP_000356 P60174 EC 5.3.1.1 TIM
NM_001159287 NP_001152759 P60174 EC 5.3.1.1  
NM_001258026 NP_001244955      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M10036 AAB59511 P60174 EC 5.3.1.1
BC007086 AAH07086 P60174 EC 5.3.1.1
BC007812 AAH07812 P60174 EC 5.3.1.1
BC009329 AAH09329 P60174 EC 5.3.1.1
BC011611 AAH11611 P60174 EC 5.3.1.1
BC015100 AAH15100 P60174 EC 5.3.1.1
BC017165 AAH17165 P60174 EC 5.3.1.1
BC017917 AAH17917 P60174 EC 5.3.1.1
BC070129 AAH70129 P60174 EC 5.3.1.1
DQ893249 ABM84175    
DQ896578 ABM87577    
D28460 BAA05826    
AK222638 BAD96358 Q53HE2  
AK313282 BAG36090 P60174 EC 5.3.1.1
AK300661 BAG62347 B4DUI5  
AK298809 BAH12874 B7Z5D8  
CR541702 CAG46503 P60174 EC 5.3.1.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TPI1 NP_001152759 M.musculus Tpi1 21991 Gene Info NP_033441 91
A.gambiae AgaP_AGAP001630 1281542   XP_321467 67
D.melanogaster Tpi 43582   NP_788764 65
C.elegans tpi-1 174844   NP_496563 62
A.thaliana TPI 824710   NP_191104 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)