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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ZCCHC17, zinc finger, CCHC domain containing 17
Sequence ID:NM_016505
Entrez Gene ID:51538
Ensembl ID:ENSG00000121766

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 31769899 - 31837784

NM_016505 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1813176984131769921
822023178289031783010
2032603179195531792012
2613613181002131810121
3624533181180331811894
4545543181948631819586
5557003182167531821820
70116023183687831837779

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3009823Full LengthBC007446zinc finger, CCHC domain containing 17
6527025Full LengthBC050609zinc finger, CCHC domain containing 17
3347946IncompleteBC000685zinc finger, CCHC domain containing 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057589  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016505 NP_057589 Q9NP64 S1

Related Sequences

 
mRNAGenPeptSwissProt
AF151077 AAF36163 Q9NP64
AF151085 AAF36171 Q9NP64
AF247661 AAF72518 Q9NP64
BC000685 AAH00685 Q9NP64
BC007446 AAH07446 Q9NP64
BC050609 AAH50609 Q9NP64
DQ893246 ABM84172  
DQ896575 ABM87574  
AK001929 BAA91984 Q9NP64
AK022506 BAB14066 Q9NP64
AK024049 BAB14799 Q9NP64
AK302248 BAG63600 B4DY38
AK302343 BAG63671 B4DYA9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ZCCHC17 NP_057589 M.musculus Zcchc17 619605 Gene Info NP_694800 95
R.norvegicus Zcchc17 500555   NP_001102737 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)