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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STX12, syntaxin 12
Sequence ID:NM_177424
Entrez Gene ID:23673
Ensembl ID:ENSG00000117758

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 28149339 - 28150963

NM_177424 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12432809969328099935
2443132811607228116141
3144132812004328120142
4145512812818828128325
5525952813675628136799
5967012813867328138778
7027742814436128144433
7758572814616028146242
85830782814874128150961

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3851266Full LengthBC046999syntaxin 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_803173  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177424 NP_803173 Q86Y82 Syntaxin
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
BC046999 AAH46999 Q86Y82
AF123769 AAP97248 Q86Y82
HQ448623 ADQ33101  
AK315880 BAF98771 B0AZT9
AK297585 BAG59973 Q86Y82
AK299982 BAG61803 B4DSZ1
AL035306 CAA22911 Q86Y82
Q6LEU0
CR407620 CAG28548 Q6LEU0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STX12 NP_803173 M.musculus Stx12 100226 Gene Info NP_598648 93
R.norvegicus Stx12 65033   NP_075228 92
C.elegans syn-13 172718   NP_492422 36
A.thaliana SYP21 831546   NP_197185 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)