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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CLP1, cleavage and polyadenylation factor I subunit 1
Sequence ID:NM_001142597
NM_006831
Entrez Gene ID:10978
Ensembl ID:ENSG00000172409

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 57425234 - 57429336

 Exon Info From UCSC:
NM_001142597
NM_006831

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821321Full LengthBC000446CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006822  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001142597 NP_001136069      
NM_006831 NP_006822 Q92989 EC 2.7.1.78 Clp1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U73524 AAC50780 Q92989 EC 2.7.1.78
BC000446 AAH00446 Q92989 EC 2.7.1.78
AK313007 BAG35843 Q92989 EC 2.7.1.78
AK300232 BAG62000 Q92989 EC 2.7.1.78

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLP1 NP_006822 M.musculus Clp1 98985 Gene Info NP_598601 99
R.norvegicus Clp1 311166   NP_001009599 99
A.gambiae CLP1_ANOGA 1269532   XP_308174 60
D.melanogaster cbc 36494   NP_610876 57
C.elegans F59A2.4 175442   NP_001040858 49
A.thaliana CLPS3 819626   NP_187119 43
S.pombe SPAC22H10.05c 2541907   NP_593741 35
N.crassa NCU06314 3878710   XP_962576 34
S.cerevisiae CLP1 854424   NP_014893 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)