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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL27A, Ribosomal protein L27a
Sequence ID:NM_000990
Entrez Gene ID:6157
Ensembl ID:ENSG00000166441

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 8705773 - 8705903

NM_000990 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
136987039948704362
37043387047488704811
43450987055528705627
51068487062648706438
685487887072248711417

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4052417Full LengthBC005326ribosomal protein L27a
5311530Full LengthBC066326ribosomal protein L27a
3543815IncompleteBC020169ribosomal protein L27a
3906869IncompleteBC014919ribosomal protein L27a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000981  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000990 NP_000981 P46776 L15

Related Sequences

 
mRNAGenPeptSwissProt
U14968 AAA85656 P46776
BC005326 AAH05326 P46776
BC020169 AAH20169 P46776
BC066326 AAH66326 Q6NZ52
AK311767 BAG34710 P46776

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL27A NP_000981 M.musculus Gm7536 665189 Gene Info XP_980250 97
M.musculus Rpl27a 26451 Gene Info NP_036105 97
R.norvegicus Rpl27a 293418   NP_001099760 97
A.gambiae AgaP_AGAP011706 1280931   XP_320804 74
C.elegans Y37E3.8 171767   NP_490927 71
D.melanogaster RpL27A 33654   NP_476963 69
A.thaliana AT1G70600 843397   NP_177217 66
A.thaliana RPL27AB 838938   NP_173743 66
P.falciparum PFF0885w 3885802   XP_966168 66
S.pombe rpl2801 2541130   NP_596326 65
S.pombe rpl2802 2539548   NP_587907 64
N.crassa NCU03806 3877355   XP_961195 62
S.cerevisiae RPL28 852775   NP_011412 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)