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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL11A1, collagen, type XI, alpha 1
Sequence ID:NM_001190709
NM_001854
NM_080629
NM_080630
RefSeqGene ID:NG_008033
Entrez Gene ID:1301
Ensembl ID:ENSG00000060718

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
FIBROCHONDROGENESIS 
INTERVERTEBRAL DISC DISEASEASPN
CILP
COL9A2
COL9A3
MMP9
THBS2
MARSHALL SYNDROME 
STICKLER SYNDROME, TYPE II 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 103343040 - 103496769

 Exon Info From UCSC:
NM_001190709
NM_001854
NM_080629
NM_080630

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40073305Full LengthBC117697collagen, type XI, alpha 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190709 NP_001177638    
NM_001854 NP_001845 P12107  
NM_080629 NP_542196    
NM_080630 NP_542197    

Related Sequences

 
mRNAGenPeptSwissProt
J04177 AAA51891 P12107
BC117697 AAI17698 Q149N0
AB208844 BAD92081 Q59HB5
AK299025 BAG61102 B4DQZ0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL11A1 NP_542196 R.norvegicus Col11a1 25654   XP_342326 94
M.musculus Col11a1 12814 Gene Info NP_031755 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)