Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPL13A, ribosomal protein L13a
Sequence ID:NM_001270491
NM_012423
NR_073024
Entrez Gene ID:23521
Ensembl ID:ENSG00000142541

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 49993545 - 49995564

Transcript StartTranscript EndChromosomal Start Chromosomal End
1374999086449990900
381104999310649993178
1111764999348849993553
1772784999373149993832
2793644999403549994120
3654244999429649994355
4255474999468149994803
54811244999498549995561

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822802Full LengthBC000514ribosomal protein L13a
2961667Full LengthBC001675ribosomal protein L13a
2961667Full LengthBC001836ribosomal protein L13a
4908022Full LengthBC062537ribosomal protein L13a
5808487Full LengthBC071929ribosomal protein L13a
6161599Full LengthBC065236ribosomal protein L13a
6726477Full LengthBC105605ribosomal protein L13a
6736442Full LengthBC070223ribosomal protein L13a
3545758IncompleteBC004900ribosomal protein L13a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036555  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270491 NP_001257420    
NM_012423 NP_036555 P40429 Ribosomal_L13

Related Sequences

 
mRNAGenPeptSwissProt
BC000514 AAH00514 P40429
BC001675 AAH01675 P40429
BC001836 AAH01836 P40429
BC004900 AAH04900 Q9BSQ6
BC062537 AAH62537 P40429
BC065236 AAH65236 P40429
BC070223 AAH70223 P40429
BC071929 AAH71929 P40429
BC105605 AAI05606 Q0VGL3
EU831542 ACE86461  
EU831455 ACE87142  
HQ447707 ADQ32192  
AB082924 BAC16800 Q8J015
AK222747 BAD96467 Q53H34
AK291120 BAF83809 P40429
AK297859 BAG60190 B4DNC8
X56932 CAA40254 P40429

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL13A NP_036555 R.norvegicus Rpl13a 317646   NP_775462 97
M.musculus Rpl13a 22121 Gene Info NP_033464 96
N.crassa NCU01221 3877719   XP_961587 63
A.thaliana AT3G07110 819897   NP_001030654 62
A.thaliana AT4G13170 826931   NP_193053 62
A.thaliana AT5G48760 834934   NP_001078737 61
A.thaliana AT3G24830 822081   NP_189127 61
S.pombe rpl1601 2541175   NP_595253 61
S.pombe rpl1602 2542006   NP_594441 61
S.pombe rpl1603 2540373   NP_596434 60
D.melanogaster RpL13A 40687   NP_649560 58
C.elegans rpl-16 175455   NP_497721 54
P.falciparum PF10_0043 810201   XP_001347328 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)