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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRAPPC3, Trafficking protein particle complex 3
Sequence ID:NM_001270896
NM_001270894
NM_014408
NM_001270895
NM_001270897
Entrez Gene ID:27095
Ensembl ID:ENSG00000054116

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, t-cell, testis, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 36602632 - 36615070

Transcript StartTranscript EndChromosomal Start Chromosomal End
197673660217436602922
7689503660339636603578
95110503660532036605419
105111483660566936605766
114912783661493736615066

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3051295Full LengthBC007662trafficking protein particle complex 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055223  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270894 NP_001257823    
NM_001270895 NP_001257824    
NM_001270896 NP_001257825    
NM_001270897 NP_001257826    
NM_014408 NP_055223 O43617 TRAPP_Bet3

Related Sequences

 
mRNAGenPeptSwissProt
AF041432 AAB96936 O43617
AY007139 AAG02000 O43617
BC007662 AAH07662 O43617
AK315610 BAG37979 O43617
AJ224335 CAA11902 O43617

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRAPPC3 NP_055223 M.musculus Trappc3 27096 Gene Info NP_038746 98
R.norvegicus Trappc3 362599   NP_001008377 98
D.melanogaster Bet3 39090   NP_648312 61
S.cerevisiae BET3 853942   NP_012994 57
S.pombe bet3 2543570   NP_593886 56
A.thaliana AT5G54750 835565   NP_001190539 55
N.crassa NCU05796 3876219   XP_960056 54
P.falciparum PFD0895c 812505   XP_001351493 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)