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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CXCL12, Chemokine (C-X-C motif) ligand 12
Sequence ID:NM_000609
NM_199168
NM_001178134
NM_001033886
RefSeqGene ID:NG_016861
Entrez Gene ID:6387
Ensembl ID:ENSG00000107562

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
AIDS, RAPID PROGRESSION TOCCL11
CCL2
CCL3
CCL3L1
CD209
CX3CR1
CXCR1
HLA-C
HLA-C
HLA-C
IFNG
IL10
IL4R
IL4R
KIR3DL1

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q11.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 44872332 - 44872548

 Exon Info From UCSC:
NM_000609
NM_199168
NM_001178134
NM_001033886

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5729604Full LengthBC039893chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
5314832IncompleteBC031072chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_954637  NP_000600  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000609 NP_000600 P48061 IL8
NM_001033886 NP_001029058    
NM_001178134 NP_001171605    
NM_199168 NP_954637   IL8

Related Sequences

 
mRNAGenPeptSwissProt
U16752 AAA97434 P48061
L36033 AAB39332 P48061
L36034 AAB39333 P48061
BC039893 AAH39893 P48061
AY644456 AAT76437 P48061
AY874118 AAW82036 P48061
DQ345517 ABC69270 P48061
DQ345518 ABC69271 P48061
DQ345519 ABC69272 P48061
DQ345520 ABC69273 P48061
AK090482 BAC03463 Q8NF00
AK292628 BAF85317 P48061
AK311814 BAG34757 P48061
AL713778 CAD28539  
CR450283 CAG29279 P48061

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta